microRNA-directed
chromatin silencing
(Tang 2005; Zofall and Grewal 2006;
Aravin, Hannon et al.
2007; Brennecke, Aravin et
al. 2007; Buker,
Iida et al. 2007; Ding
and Voinnet 2007; Brennecke,
Malone et al. 2008; Hutvagner
and Simard 2008; White
and Allshire 2008; Csorba,
Pantaleo et al. 2009; David-Rus,
Mukhopadhyay et al. 2009; Braun,
Cannella et al. 2010; Chellappan,
Xia et al. 2010; Grewal
2010; Mukhopadhyay,
Nagaraj et al. 2010; Djuranovic,
Nahvi et al. 2011; Gagnon
and Corey 2012; Huang
and Li 2012; Wu,
Mao et al. 2012; Zhang
and Zhu 2012; Handler,
Meixner et al. 2013).
Table 1. Genome
immunity by microRNA targeting of mobile
DNA
(see also http://shapiro.bsd.uchicago.edu/TableII.9.shtml for
earlier references).
|
Organisms
|
microRNA targets
|
References
|
Plants
|
Transposable
elements
|
(Rigal
and Mathieu 2011; Ng,
Lu et al. 2012; Nuthikattu,
McCue et al. 2013)
|
Arabidopsis
|
Retrotransposons
|
(Mirouze,
Reinders et al. 2009; Slotkin
2010)
|
Rice
|
Retrotransposons
|
(Tian,
Yu et al. 2011)
|
Brassica
|
Retrotransposons
|
(Zhang,
Ge et al. 2013)
|
Arabidopsis
|
Transposable
elements
|
(McCue,
Nuthikattu et al. 2012)
|
Maize
|
Transposable
elements
|
(Barber,
Zhang et al. 2012; He,
Chen et al. 2013)
|
Plants
|
Viruses
and viroids
|
(Navarro,
Pantaleo et al. 2009; Pantaleo
2011; Zhu
and Guo 2012; Ramesh,
Ratnaparkhe et al. 2014)
|
Rice,
tobacco and Laodelphgax
striatellus insect vector
|
Rice
stripe virus
|
(Xu,
Huang et al. 2012)
|
Arabidopsis
|
Geminiviruses
|
(Vanitharani,
Chellappan et al. 2005; Raja,
Jackel et al. 2013)
|
Caenorhabditis elegans
germ-line
|
Transposons
|
(Sijen
and Plasterk 2003; Buckley,
Burkhart et al. 2012; Lee,
Gu et al. 2012)
|
Drosophila
|
Viruses
|
(van
Rij, Saleh et al. 2006)
|
Drosophila
somatic cells
|
Retrotransposons
|
(Kawamura,
Saito et al. 2008)
|
Drosophila
male germ-line
|
Retrotransposons
|
(Kalmykova,
Klenov et al. 2005)
|
Drosophila
female germ-line
|
Transposons,
retrotransposons and retroviruses
|
(Brennecke,
Aravin et al. 2007; Brennecke,
Malone et al. 2008)
|
Drosophila
female germ-line
|
Telomeric
retrotransposons
|
(Shpiz,
Kwon et al. 2009)
|
Drosophila
gonads
|
Transposons
|
(Sienski,
Donertas et al. 2012)
|
Drosophila
somatic and germ-line cells
|
Transposons,
retrotransposons and retroviruses
|
(Handler,
Meixner et al. 2013)
|
Drosophila
tissue culture cells
|
Transposons
|
(Chung,
Okamura et al. 2008)
|
Shrimp
|
White
spot syndrome DNA virus
|
(Huang
and Zhang 2013; Sabin
and Cherry 2013)
|
Mammalian
cells
|
EMCV
and NoV RNA viruses
|
(Maillard,
Ciaudo et al. 2013)
|
Human
tissue culture cells
|
LINE
retrotransposons
|
(Yang
and Kazazian 2006)
|
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|