DNA Transposons

(Goodwin, Butler et al. 2003; Kapitonov and Jurka 2006; Biedler, Shao et al. 2007; de Boer, Yazawa et al. 2007; Dooner and Weil 2007; Feschotte and Pritham 2007; Laha, Loukas et al. 2007; Pace and Feschotte 2007; Ray, Pagan et al. 2007; Linheiro and Bergman 2008; Marzo, Puig et al. 2008; O'Donnell and Boeke 2008; Pace, Gilbert et al. 2008; Ray, Feschotte et al. 2008; Bao, Jurka et al. 2009; Markljung, Jiang et al. 2009; Novick, Smith et al. 2009; Bao, Kapitonov et al. 2010; Gangadharan, Mularoni et al. 2010; Marquez and Pritham 2010; Marquez and Pritham 2010; Munoz-Lopez and Garcia-Perez 2010; Schaack, Choi et al. 2010; Diao, Qi et al. 2011; Fischer and Suttle 2011; Novick, Smith et al. 2011; Yaakov and Kashkush 2011; Pagan, Macas et al. 2012)




Bao, W., M. G. Jurka, et al. (2009). "New superfamilies of eukaryotic DNA transposons and their internal divisions." Mol Biol Evol 26(5): 983-993. http://www.ncbi.nlm.nih.gov/pubmed/19174482.

Bao, W., V. V. Kapitonov, et al. (2010). "Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons." Mob DNA 1(1): 3. http://www.ncbi.nlm.nih.gov/pubmed/20226081.

Biedler, J. K., H. Shao, et al. (2007). "Evolution and horizontal transfer of a DD37E DNA transposon in mosquitoes." Genetics 177(4): 2553-2558. http://www.ncbi.nlm.nih.gov/pubmed/17947403.

de Boer, J. G., R. Yazawa, et al. (2007). "Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids." BMC Genomics 8: 422. http://www.ncbi.nlm.nih.gov/pubmed/18021408.

Diao, Y., Y. Qi, et al. (2011). "Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes." PLoS One 6(2): e16743. http://www.ncbi.nlm.nih.gov/pubmed/21379317.

Dooner, H. K. and C. F. Weil (2007). "Give-and-take: interactions between DNA transposons and their host plant genomes." Curr Opin Genet Dev 17(6): 486-492. http://www.ncbi.nlm.nih.gov/pubmed/17919898.

Feschotte, C. and E. J. Pritham (2007). "DNA transposons and the evolution of eukaryotic genomes." Annu Rev Genet 41: 331-368. http://www.ncbi.nlm.nih.gov/pubmed/18076328.

Fischer, M. G. and C. A. Suttle (2011). "A virophage at the origin of large DNA transposons." Science 332(6026): 231-234. http://www.ncbi.nlm.nih.gov/pubmed/21385722.

Gangadharan, S., L. Mularoni, et al. (2010). "DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo." Proc Natl Acad Sci U S A 107(51): 21966-21972. http://www.ncbi.nlm.nih.gov/pubmed/21131571.

Goodwin, T. J., M. I. Butler, et al. (2003). "Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi." Microbiology 149(Pt 11): 3099-3109. http://www.ncbi.nlm.nih.gov/pubmed/14600222.

Kapitonov, V. V. and J. Jurka (2006). "Self-synthesizing DNA transposons in eukaryotes." Proc Natl Acad Sci U S A 103(12): 4540-4545. http://www.ncbi.nlm.nih.gov/pubmed/16537396.

Laha, T., A. Loukas, et al. (2007). "The bandit, a New DNA Transposon from a Hookworm-Possible Horizontal Genetic\ Transfer between Host and Parasite." PLoS Negl Trop Dis\ 1\(1\): e35\. http://www.ncbi.nlm.nih.gov/pubmed/17989781%22.

Linheiro, R. S. and C. M. Bergman (2008). "Testing the palindromic target site model for DNA transposon insertion using the Drosophila melanogaster P-element." Nucleic Acids Res 36(19): 6199-6208. http://www.ncbi.nlm.nih.gov/pubmed/18829720.

Markljung, E., L. Jiang, et al. (2009). "ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth." PLoS Biol 7(12): e1000256. .

Marquez, C. P. and E. J. Pritham (2010). "Phantom, a new subclass of Mutator DNA transposons found in insect viruses and widely distributed in animals." Genetics 185(4): 1507-1517. http://www.ncbi.nlm.nih.gov/pubmed/20457878.

Marquez, C. P. and E. J. Pritham (2010). "Phantom, a New Subclass of Mutator DNA Transposons Found in Insect Viruses and\ Widely Distributed in Animals." Genetics\. http://www.ncbi.nlm.nih.gov/pubmed/20457878%22.

Marzo, M., M. Puig, et al. (2008). "The Foldback-like element Galileo belongs to the P superfamily of DNA transposons and is widespread within the Drosophila genus." Proc Natl Acad Sci U S A 105(8): 2957-2962. http://www.ncbi.nlm.nih.gov/pubmed/18287066.

Munoz-Lopez, M. and J. L. Garcia-Perez (2010). "DNA transposons: nature and applications in genomics." Curr Genomics 11(2): 115-128. .

Novick, P., J. Smith, et al. (2009). "Independent and parallel lateral transfer of DNA transposons in tetrapod genomes." Gene\. http://www.ncbi.nlm.nih.gov/pubmed/19747963%22.

Novick, P. A., J. D. Smith, et al. (2011). "The evolution and diversity of DNA transposons in the genome of the Lizard Anolis carolinensis." Genome Biol Evol 3: 1-14. http://www.ncbi.nlm.nih.gov/pubmed/21127169.

O'Donnell, K. A. and J. D. Boeke (2008). "Domesticated DNA transposon proteins mediate retrotransposon control." Cell Res 18(3): 331-333. http://www.ncbi.nlm.nih.gov/pubmed/18311163.

Pace, J. K., 2nd and C. Feschotte (2007). "The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage." Genome Res 17(4): 422-432. http://www.ncbi.nlm.nih.gov/pubmed/17339369.

Pace, J. K., 2nd, C. Gilbert, et al. (2008). "Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods." Proc Natl Acad Sci U S A 105(44): 17023-17028. http://www.ncbi.nlm.nih.gov/pubmed/18936483.

Pagan, H. J., J. Macas, et al. (2012). "Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats." Genome Biol Evol 4(4): 575-585. http://www.ncbi.nlm.nih.gov/pubmed/22491057.

Ray, D. A., C. Feschotte, et al. (2008). "Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus." Genome Res 18(5): 717-728. http://www.ncbi.nlm.nih.gov/pubmed/18340040.

Ray, D. A., H. J. Pagan, et al. (2007). "Bats with hATs: evidence for recent DNA transposon activity in genus Myotis." Mol Biol Evol\ 24\(3\): 632-639\. http://www.ncbi.nlm.nih.gov/pubmed/17150974%22.

Schaack, S., E. Choi, et al. (2010). "DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex." Genome Biol 11(4): R46. http://www.ncbi.nlm.nih.gov/pubmed/20433697.

Yaakov, B. and K. Kashkush (2011). "Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid." Genome 54(1): 42-49. http://www.ncbi.nlm.nih.gov/pubmed/21217805.