ONLINE MATERIAL FOR HOW LIFE CHANGES ITSELF: THE READ-WRITE (RW) GENOME

Table 1F. Genome Formatting for Replication. http://shapiro.bsd.uchicago.edu/Table1F.GenomeFormattingforReplication.html

Figure 1H. Spliceosomal RNA processing and formatting. http://shapiro.bsd.uchicago.edu/Figure1H.SpliceosomalActionandFormatting.html

Table 2A. Processes Governed by Nucleoprotein Complexes Within the Cell Cycle.  http://shapiro.bsd.uchicago.edu/Table2A.ProcessesGovernedbyNucleoproteinComplexesWithintheCellCycle.html

Figure 2B(1). Schematic diagram of nucleosome assembly and structure. http://shapiro.bsd.uchicago.edu/Figure2B%281%29.SchematicDiagramofNucleosomeAssemblyandStructure.html

Table 2C(2). Documented Horizontal DNA Transfer Events in the Three Domains of Life. http://shapiro.bsd.uchicago.edu/Table2C%282%29.DocumentedHorizontalDNATransferEventsintheThreeDomainsofLife.html

Table 3B. Some mutagenic and non-mutagenic repair processes.  http://shapiro.bsd.uchicago.edu/Table3B.SomeMutagenicandNon-mutagenicRepairProcesses.html

Table 4A. Cell Biochemical Activities Used in Natural Genetic Engineering (NGE). http://shapiro.bsd.uchicago.edu/Table4A.CellBiochemicalActivitiesUsedinNaturalGeneticEngineering%28NGE%29.html

Figure 4B(1). Five protein families dictate different transposition pathways. http://shapiro.bsd.uchicago.edu/Figure4B%281%29.FiveProteinFamiliesDictateDifferentTranspositionPathways.html

Figure 4B(2)-1. HIV viral structure and reproduction cycle. http://shapiro.bsd.uchicago.edu/Figure4B(2)-1.HIVViralStructureandReproductionCycle.html

Fig 4B(2)-2. Mechanism of reverse transcription in class VI virus ssRNA-RT, human immunodeficiency virus (HIV). http://shapiro.bsd.uchicago.edu/Figure4B(2)-2.MechanismofReverseTranscriptioninHIV.html

Figure 4B(3). Target-primed reverse transcription (TPRT). http://shapiro.bsd.uchicago.edu/Figure4B(3).Target-PrimedReverseTranscription(TPRT).html

Figure 4B(4). Impact of transposable elements (TEs) on eukaryotic genome architecture and gene expression. http://shapiro.bsd.uchicago.edu/Figure4B%284%29.ImpactofTransposableElements%28TEs%29onEukaryoticGenomeArchitectureandGeneExpression.html

Table 4B(4). More Formatting of Insertion Targets by Mobile Genetic Elements. http://shapiro.bsd.uchicago.edu/Table4B%284%29.MoreFormattingofInsertionTargetsbyMobileGeneticElements.html

Table 4E(1). Mobile Genetic Elements as Vectors in Human Genetic Engineering. http://shapiro.bsd.uchicago.edu/Table4E%281%29.MobileGeneticElementsasVectorsinHumanGeneticEngineering.html

Table 4F(1). Induced transgenerational epigenetic changes. http://shapiro.bsd.uchicago.edu/Table4F%281%29.InducedTransgenerationaEpigeneticChanges.html

Table 5A. Examples of documented exon shuffling by mobile genetic elements. http://shapiro.bsd.uchicago.edu/Table5A.ExamplesofDocumentedExonShufflingbyMobileGeneticElements.html

Table 5B. Reports of retrogenes in plant and animal genomes. http://shapiro.bsd.uchicago.edu/Table%205B.%20Reports%20of%20retrogenes%20in%20plant%20and%20animal%20genomes.html

Table 5C-1. Mobile Elements Found to be Exapted as cis-Regulatory Control Sites in Animals. http://shapiro.bsd.uchicago.edu/Table5C-1.MobileElementsFoundtobeExaptedascis-RegulatoryControlSitesinAnimals.html

Table 5C-2. Exaptation of transposases to regulatory and other protein functions. http://shapiro.bsd.uchicago.edu/Table5C-2.ExaptationofTransposasestoRegulatoryandOtherProteinFunctions.html

Table 5D. Whole genome duplications or other amplifications observed in the genome sequence record. http://shapiro.bsd.uchicago.edu/Table5D.WholeGenomeDuplications.html