[ James A. Shapiro ] James A. Shapiro

Origin of New Protein Domains

(Ponting and Russell 2002; Krull, Brosius et al. 2005; Pasek, Risler et al. 2006; Amit, Sela et al. 2007; Piriyapongsa, Polavarapu et al. 2007; Schmidt and Davies 2007; van Leeuwen, Monfort et al. 2007; Moller-Krull, Zemann et al. 2008; Schwartz, Gal-Mark et al. 2009; Yang and Bourne 2009; Bagowski, Bruins et al. 2010; Sela, Mersch et al. 2010; David and Alm 2011; Rajarajan, Ibrahim et al. 2011) (Piriyapongsa, Polavarapu et al. 2007; Sorek 2007; Burns and Boeke 2008; Toll-Riera, Castelo et al. 2009; Schmitz and Brosius 2011; Mandal, Pandey et al. 2013; Wissler, Gadau et al. 2013).




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Rajarajan, S., K. S. Ibrahim, et al. (2011). "AP-APSE dpol intein: A novel family A DNA polymerase intein domain." Bioinformation 6(4): 149-152. http://www.ncbi.nlm.nih.gov/pubmed/21572881.

Schmidt, E. E. and C. J. Davies (2007). "The origins of polypeptide domains." Bioessays 29(3): 262-270. http://www.ncbi.nlm.nih.gov/pubmed/17295290.

Schmitz, J. and J. Brosius (2011). "Exonization of transposed elements: A challenge and opportunity for evolution." Biochimie 93(11): 1928-1934. http://www.ncbi.nlm.nih.gov/pubmed/21787833.

Schwartz, S., N. Gal-Mark, et al. (2009). "Alu exonization events reveal features required for precise recognition of exons by the splicing machinery." PLoS Comput Biol 5(3): e1000300. http://www.ncbi.nlm.nih.gov/pubmed/19266014.

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Sorek, R. (2007). "The birth of new exons: mechanisms and evolutionary consequences." RNA 13(10): 1603-1608. http://www.ncbi.nlm.nih.gov/pubmed/17709368.

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van Leeuwen, H., A. Monfort, et al. (2007). "Mutator-like elements identified in melon, Arabidopsis and rice contain ULP1 protease domains." Mol Genet Genomics 277(4): 357-364. http://www.ncbi.nlm.nih.gov/pubmed/17136348.

Wissler, L., J. Gadau, et al. (2013). "Mechanisms and dynamics of orphan gene emergence in insect genomes." Genome Biol Evol 5(2): 439-455. http://www.ncbi.nlm.nih.gov/pubmed/23348040.

Yang, S. and P. E. Bourne (2009). "The evolutionary history of protein domains viewed by species phylogeny." PLoS One 4(12): e8378. http://www.ncbi.nlm.nih.gov/pubmed/20041107.