Natural
Genetic
Engineering and Evolutionary Genomic Innovation
(Hedges and Batzer
2005; Giraud, Refregier
et al. 2008; Scheifele and Boeke
2008; Dobrindt, Chowdary
et al. 2010; Kaessmann 2010; Rothschild 2010; Portnoy, Bezdan et
al. 2011)
Horizontal
DNA transfer and formation of chimeric sequences originating
in more than one
cell lineage
(Daniels, Peterson
et al. 1990; Kordis and Gubensek
1998; Bird and Koltai
2000; Bergthorsson, Adams
et al. 2003; Bergthorsson,
Richardson et al. 2004; Davis and Wurdack
2004; Odom, Shenkenberg
et al. 2004; Rogers and Keeling
2004; Dagan and Martin
2006; Diao, Freeling et
al. 2006; Fiebig, Hartmann et
al. 2006; Richards, Dacks et
al. 2006; Simoes-Barbosa,
Arganaraz et al.
2006; Choi and Kim 2007; Marri, Hao et al.
2007; Nisa-Martinez,
Jimenez-Zurdo et al.
2007; Bratke and
McLysaght 2008; Davids and Zhang
2008; Fortune, Roulin et
al. 2008; Pace, Gilbert et
al. 2008; Price, Dehal et al.
2008; Sanchez-Puerta, Cho
et al. 2008; Tamames and Moya
2008; Xie, Fu et al. 2008; Bock 2009; Boyer, Yutin et al.
2009; Emiliani, Fondi et
al. 2009; Koonin 2009; Mitreva, Smant et
al. 2009; Pontiroli, Rizzi et
al. 2009; Hecht, Nitz et al.
2010; Liu and Zhu 2010; Schaack, Gilbert et
al. 2010; Snir and Trifonov
2010; Thomas, Schaack et
al. 2010; Corander, Connor et
al. 2011; Creevey, Doerks et
al. 2011; Grbic, Van Leeuwen
et al. 2011; Haegeman, Jones et
al. 2011; Kikuchi, Cotton et
al. 2011; Maruyama, Suzaki et
al. 2011; Mayer, Schuster et
al. 2011; Richards, Soanes et
al. 2011; Sanchez 2011; Scholl and Bird
2011; Yoshida, Claverie
et al. 2011)
Viruses and
proviruses
(Schon, Seifarth et
al. 2001; Dunn, Medstrand et
al. 2003; Mallet and
Prudhomme 2004; Dunn, van de
Lagemaat et al. 2005; Buzdin,
Kovalskaya-Alexandrova et
al. 2006; Dunn, Romanish et
al. 2006; Kovalskaya, Buzdin
et al. 2006; Nellaker, Yao et
al. 2006; Sin, Huh et al.
2006; Moyes, Griffiths et
al. 2007; Conley,
Piriyapongsa et al. 2008; Huh, Kim et al.
2008; Lee, Malim et al.
2008; Tumapa, Holden et
al. 2008; Balada, Ordi-Ros et
al. 2009; Boyer, Yutin et al.
2009; Gogvadze,
Stukacheva et al. 2009; Mueller, Coleman et
al. 2009; Schon, Diem et al.
2009; Wang, Kim et al.
2009; Fujii 2010; Perron and Lang
2010; 2011; Coolen 2011; Nascimento, Gongora
et al. 2011; Rasko, Webster et
al. 2011)
Endogenous retroviruses
(Hefti and Panem
1981; Urnovitz and Murphy
1996; Schon, Seifarth et
al. 2001; Pelisson, Mejlumian
et al. 2002; Dunn, Medstrand et
al. 2003; Dunn, van de
Lagemaat et al. 2005; Yano, Panbehi et
al. 2005; Dunn, Romanish et
al. 2006; Kovalskaya, Buzdin
et al. 2006; Nellaker, Yao et
al. 2006; Moyes, Griffiths et
al. 2007; Balada, Ordi-Ros et
al. 2009; Gogvadze,
Stukacheva et al. 2009; Schon, Diem et al.
2009; Perron and Lang
2010; Wang, Liska et al.
2010; Nascimento, Gongora
et al. 2011)
“Point”
mutations and the role of “cryptic” sequence variation
(Kugelberg, Kofoid
et al. 2010; Hayden, Ferrada et
al. 2011)
Chromosome
restructuring, fragile sites, maintenance of syntenic regions
and karyotype
evolution (including cancer cells)