Extra References on How E. Coli Chooses The Best Sugar To Eat (see Appendix I.1)

How E. Coli Chooses The Best Sugar To Eat

(Monod 1942; Monod 1949; Monod and Cohn 1952; Jacob, Perrin et al. 1960; Jacob and Monod 1961; Jacob and Wollman 1961; Monod and Jacob 1961; Monod, Changeux et al. 1963; Jacob, Ullman et al. 1964; Monod, Wyman et al. 1965; Monod 1966; Monod 1966; Scaife and Beckwith 1966; Arditti, Scaife et al. 1968; Perlman and Pastan 1968; De Crombrugghe, Perlman et al. 1969; Perlman, De Crombrugghe et al. 1969; Silverstone, Magasanik et al. 1969; Pastan and Perlman 1970; De Crombrugghe, Chen et al. 1971; De Crombrugghe, Chen et al. 1971; Pastan and Perlman 1971; Pastan and Perlman 1972; Jobe and Bourgeois 1973; Epstein, Rothman-Denes et al. 1975; Mitchell, Reznikoff et al. 1975; Tagami, Inada et al. 1995; Crasnier 1996; Inada, Kimata et al. 1996; Mueller-Hill 1996; Kimata, Takahashi et al. 1997; Debre 1998; Jacob, Perrin et al. 2005; Deutscher, Francke et al. 2006; Madan Babu, Teichmann et al. 2006; Kuhlman, Zhang et al. 2007; Wilson, Zhan et al. 2007; Crasnier-Mednansky 2008; Deutscher 2008; Gorke and Stulke 2008; Ullmann 2008; Missiuro, Liu et al. 2009; Narang 2009; Legout 2010; Llopis, Jackson et al. 2010; Morange 2010)





Arditti, R. R., J. G. Scaife, et al. (1968). "The nature of mutants in the lac promoter region." J Mol Biol 38(3): 421-426. http://www.ncbi.nlm.nih.gov/pubmed/4887878.

Crasnier, M. (1996). "Cyclic AMP and catabolite repression." Res Microbiol\ 147\(6-7\): 479-482\. http://www.ncbi.nlm.nih.gov/pubmed/9084758\.

Crasnier-Mednansky, M. (2008). "Is there any role for cAMP-CRP in carbon catabolite repression of the Escherichia coli lac operon?" Nat Rev Microbiol 6(12): 954; author reply 954. http://www.ncbi.nlm.nih.gov/pubmed/18955986.

De Crombrugghe, B., B. Chen, et al. (1971). "Lac DNA, RNA polymerase and cyclic AMP receptor protein, cyclic AMP, lac repressor and inducer are the essential elements for controlled lac transcription." Nat New Biol 231(22): 139-142. http://www.ncbi.nlm.nih.gov/pubmed/4326354.

De Crombrugghe, B., R. L. Perlman, et al. (1969). "Regulation of inducible enzyme synthesis in Escherichia coli by cyclic adenosine 3', 5'-monophosphate." J Biol Chem 244(21): 5828-5835. http://www.ncbi.nlm.nih.gov/pubmed/4310825.

De Crombrugghe, E., B. Chen, et al. (1971). "Role of cyclic adenosine 3',5'-monophosphate and the cyclic adenosine 3',5'-monophosphate receptor protein in the initiation of lac transcription." J Biol Chem 246(23): 7343-7348. http://www.ncbi.nlm.nih.gov/pubmed/4333322.

Debre, P. (1998). "[Jacques Monod (1910-1976) or the discovery of the operon]." Rev Prat 48(15): 1634-1637. http://www.ncbi.nlm.nih.gov/pubmed/9814062.

Deutscher, J. (2008). "The mechanisms of carbon catabolite repression in bacteria." Curr Opin Microbiol\ 11\(2\): 87-93\. http://www.ncbi.nlm.nih.gov/pubmed/18359269\.

Deutscher, J., C. Francke, et al. (2006). "How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria." Microbiol Mol Biol Rev 70(4): 939-1031. http://www.ncbi.nlm.nih.gov/pubmed/17158705.

Epstein, W., L. B. Rothman-Denes, et al. (1975). "Adenosine 3':5'-cyclic monophosphate as mediator of catabolite repression in Escherichia coli." Proc Natl Acad Sci U S A 72(6): 2300-2304. http://www.ncbi.nlm.nih.gov/pubmed/166384.

Gorke, B. and J. Stulke (2008). "Carbon catabolite repression in bacteria: many ways to make the most out of  nutrients." Nat Rev Microbiol 6(8): 613-624. http://www.ncbi.nlm.nih.gov/pubmed/18628769.

Inada, T., K. Kimata, et al. (1996). "Mechanism responsible for glucose-lactose diauxie in Escherichia coli: challenge to the cAMP model." Genes Cells 1(3): 293-301. http://www.ncbi.nlm.nih.gov/pubmed/9133663.

Jacob, F. and J. Monod (1961). "Genetic regulatory mechanisms in the synthesis of proteins." J Mol Biol 3: 318-356. http://www.ncbi.nlm.nih.gov/pubmed/13718526\.

Jacob, F., D. Perrin, et al. (1960). "Operon: a group of genes with the expression oordinated by an operator." C. R. Hebd. Seances Acad. Sci 250: 1727–1729. http://www.ncbi.nlm.nih.gov/pubmed/14406329.

Jacob, F., D. Perrin, et al. (2005). "[The operon: a group of genes with expression coordinated by an operator. C.R.Acad. Sci. Paris 250 (1960) 1727-1729]." C R Biol 328(6): 514-520. http://www.ncbi.nlm.nih.gov/pubmed/15999435.

Jacob, F., A. Ullman, et al. (1964). "[the Promotor, a Genetic Element Necessary to the Expression of an Operon.]." C R Hebd Seances Acad Sci\ 258\: 3125-3128\. http://www.ncbi.nlm.nih.gov/pubmed/14143651\.

Jacob, F. and E. L. Wollman (1961). "Viruses and Genes." Scientific American 204(6): 92-110. http://www.ncbi.nlm.nih.gov/pubmed/13718528.

Jobe, A. and S. Bourgeois (1973). "Lac repressor-operator interaction. 8. Lactose is an anti-inducer of the lac operon." J Mol Biol 75(2): 303-313. http://www.ncbi.nlm.nih.gov/pubmed/4580678.

Kimata, K., H. Takahashi, et al. (1997). "cAMP receptor protein-cAMP plays a crucial role in glucose-lactose diauxie by activating the major glucose transporter gene in Escherichia coli." Proc Natl Acad Sci U S A 94(24): 12914-12919. http://www.ncbi.nlm.nih.gov/pubmed/9371775.

Kuhlman, T., Z. Zhang, et al. (2007). "Combinatorial transcriptional control of the lactose operon of Escherichia coli." Proc Natl Acad Sci U S A 104(14): 6043-6048. http://www.ncbi.nlm.nih.gov/pubmed/17376875.

Legout, S. (2010). "Jacques Monod (1910-1976) and his publications in the "Annales de l'Institut Pasteur"." Res Microbiol 161(2): 74-76. http://www.ncbi.nlm.nih.gov/pubmed/20096778.

Llopis, P. M., A. F. Jackson, et al. (2010). "Spatial organization of the flow of genetic information in bacteria." Nature\ 466\(7302\): 77-81\. http://www.ncbi.nlm.nih.gov/pubmed/20562858\.

Madan Babu, M., S. A. Teichmann, et al. (2006). "Evolutionary dynamics of prokaryotic transcriptional regulatory networks." J Mol Biol 358(2): 614-633. http://www.ncbi.nlm.nih.gov/pubmed/16530225.

Missiuro, P. V., K. Liu, et al. (2009). "Information flow analysis of interactome networks." PLoS Comput Biol 5(4): e1000350. http://www.ncbi.nlm.nih.gov/pubmed/19503817.

Mitchell, D. H., W. S. Reznikoff, et al. (1975). "Genetic fusions defining trp and lac operon regulatory elements." J Mol Biol 93(3): 331-350. http://www.ncbi.nlm.nih.gov/pubmed/1095760.

Monod, J. (1942). Recherches sur la croissance des cultures bactériennes Paris, Hermann & cie. .

Monod, J. (1949). "Adaptation, mutation and segregation in relation to the synthesis of enzymes by bacteria." Biochem J 44(3): xix. http://www.ncbi.nlm.nih.gov/pubmed/18151009.

Monod, J. (1966). "From enzymatic adaptation to allosteric transitions." Science 154(748): 475-483. http://www.ncbi.nlm.nih.gov/pubmed/5331094.

Monod, J. (1966). "On the mechanism of molecular interactions in the control of cellular metabolism." Endocrinology\ 78(2): 412-425. http://www.ncbi.nlm.nih.gov/pubmed/5324063.

Monod, J., J. P. Changeux, et al. (1963). "Allosteric proteins and cellular control systems." J Mol Biol 6: 306-329. http://www.ncbi.nlm.nih.gov/pubmed/13936070.

Monod, J. and M. Cohn (1952). "[Biosynthesis induced by enzymes; enzymatic adaptation.]." Adv Enzymol Relat Subj Biochem 13: 67-119. http://www.ncbi.nlm.nih.gov/pubmed/14943665.

Monod, J. and F. Jacob (1961). "Teleonomic mechanisms in cellular metabolism, growth, and differentiation." Cold Spring Harb Symp Quant Biol\ 26\: 389-401\. http://www.ncbi.nlm.nih.gov/pubmed/14475415\.

Monod, J., J. Wyman, et al. (1965). "On the Nature of Allosteric Transitions: a Plausible Model." J Mol Biol 12: 88-118. http://www.ncbi.nlm.nih.gov/pubmed/14343300\.

Morange, M. (2010). "The scientific legacy of Jacques Monod." Res Microbiol 161(2): 77-81. http://www.ncbi.nlm.nih.gov/pubmed/20138988.

Mueller-Hill, B. (1996). The lac operon: a short history of a genetic paradigm. Berlin, de Gruyter. .

Narang, A. (2009). "cAMP does not have an important role in carbon catabolite repression of the Escherichia coli lac operon." Nat Rev Microbiol 7(3): 250. http://www.ncbi.nlm.nih.gov/pubmed/19230236.

Pastan, I. and R. Perlman (1970). "Cyclic adenosine monophosphate in bacteria." Science 169(943): 339-344. http://www.ncbi.nlm.nih.gov/pubmed/4317896.

Pastan, I. and R. L. Perlman (1971). "Cyclic AMP in metabolism." Nat New Biol\ 229\(1\): 5-7\. http://www.ncbi.nlm.nih.gov/pubmed/4322092\.

Pastan, I. and R. L. Perlman (1972). "Regulation of gene transcription in Escherichia coli by cyclic AMP." Adv Cyclic Nucleotide Res 1: 11-16. http://www.ncbi.nlm.nih.gov/pubmed/4353161.

Perlman, R. L., B. De Crombrugghe, et al. (1969). "Cyclic AMP regulates catabolite and transient repression in E. coli." Nature 223(5208): 810-812. http://www.ncbi.nlm.nih.gov/pubmed/4307969.

Perlman, R. L. and I. Pastan (1968). "Regulation of beta-galactosidase synthesis in Escherichia coli by cyclic adenosine 3',5'-monophosphate." J Biol Chem 243(20): 5420-5427. http://www.ncbi.nlm.nih.gov/pubmed/4302785.

Scaife, J. and J. R. Beckwith (1966). "Mutational alteration of the maximal level of Lac operon expression." Cold Spring Harb Symp Quant Biol 31: 403-408. http://www.ncbi.nlm.nih.gov/pubmed/4866390.

Silverstone, A. E., B. Magasanik, et al. (1969). "Catabolite sensitive site of the lac operon." Nature 221(5185): 1012-1014. http://www.ncbi.nlm.nih.gov/pubmed/4886742.

Tagami, H., T. Inada, et al. (1995). "Glucose lowers CRP* levels resulting in repression of the lac operon in cells lacking cAMP." Mol Microbiol 17(2): 251-258. http://www.ncbi.nlm.nih.gov/pubmed/7494474.

Ullmann, A. (2008). "The French school of molecular biology." Res Microbiol 159(1): 15-20. http://www.ncbi.nlm.nih.gov/pubmed/18164904.

Wilson, C. J., H. Zhan, et al. (2007). "The lactose repressor system: paradigms for regulation, allosteric behavior and protein folding." Cell Mol Life Sci 64(1): 3-16. http://www.ncbi.nlm.nih.gov/pubmed/17103112.