Genome Compaction, Chromatin Formatting And Epigenetic Regulation

(Elgin 1996; Grewal and Elgin 2002; Jablonka and Lamb 2002; van Driel, Fransz et al. 2003; Haynes, Leibovitch et al. 2004; Jablonka 2005; Berger 2007; Grummt 2007; Jablonka and Lamb 2007; Boi 2008; Brasileiro-Vidal, Melo-Oliveira et al. 2009; Ginsburg and Jablonka 2009; Jablonka and Raz 2009; Wu, Lessard et al. 2009; Choudhuri, Cui et al. 2010; Cui and Miao 2010; Lambert, Fillingham et al. 2010; Landry and Rifkin 2010; Mukhopadhyay, Nagaraj et al. 2010; Murr 2010; Sundar, Caito et al. 2010; Zaidi, Young et al. 2010; Baker 2011; Becker, Hagmann et al. 2011; Beisel and Paro 2011; Bell, Tiwari et al. 2011; Biddie 2011; Gissis and Jablonka 2011; Kim and Choi 2011; Lauria and Rossi 2011; Lenstra, Benschop et al. 2011; Milosavljevic 2011; Olsson and Bjerling 2011; Rach, Winter et al. 2011; Rigal and Mathieu 2011; Roux, Colome-Tatche et al. 2011; van Steensel 2011)

DNA methylation

(Aravind, Abhiman et al. 2011)

SABiosciences 2011, DNA Methylation and Transcriptional Repression, http://www.sabiosciences.com/pathway.php?sn=Transcription_Repression&utm_content=PR111117+Chromatin+Regulation+Review_us&utm_campaign=PR111116+Chromatin+Regulation_Int&utm_source=iPost&utm_medium=email

Histone DNA binding and protein modification codes, nucleosome positioning

(Lowary and Widom 1998; Bailey and Reeve 1999; Henikoff and Ahmad 2005; Chodaparambil, Edayathumangalam et al. 2006; Cohanim, Kashi et al. 2006; An 2007; Berger 2007; Bronner, Chataigneau et al. 2007; Salih, Salih et al. 2007; Swaminathan, Reddy et al. 2007; Brosch, Loidl et al. 2008; Bryant, Prabhu et al. 2008; Salih, Salih et al. 2008; Schnitzler 2008; Tirosh and Barkai 2008; Yang and Seto 2008; Andersson, Enroth et al. 2009; Bettecken and Trifonov 2009; Boyle and Furey 2009; Cazzonelli, Millar et al. 2009; Choi, Bae et al. 2009; Chung and Vingron 2009; Dai, Dai et al. 2009; Dai, Dai et al. 2009; Heintzman, Hon et al. 2009; Hublitz, Albert et al. 2009; Jiang and Pugh 2009; Jiang, Emberly et al. 2009; Litt, Qiu et al. 2009; Moriniere, Rousseaux et al. 2009; Partensky and Narlikar 2009; Teif and Rippe 2009; Wan, Lin et al. 2009; Zawadzki, Morozov et al. 2009; Zhang, Moqtaderi et al. 2009; Belch, Yang et al. 2010; Bonasio, Tu et al. 2010; Chen, Luo et al. 2010; Cheng and Blumenthal 2010; Chodavarapu, Feng et al. 2010; Clark 2010; Dhami, Saffrey et al. 2010; Eaton, Galani et al. 2010; Fan, Moqtaderi et al. 2010; Felle, Exler et al. 2010; Garcia, Dumesic et al. 2010; Garske, Oliver et al. 2010; Hebert and Roest Crollius 2010; Izzo and Schneider 2010; Kaplan, Hughes et al. 2010; Kenigsberg, Bar et al. 2010; Le, Ho et al. 2010; Liu, Lu et al. 2010; Mendez-Acuna, Di Tomaso et al. 2010; Nikolaou, Althammer et al. 2010; Pham, He et al. 2010; Pontvianne, Blevins et al. 2010; Popp, Dean et al. 2010; Tirosh, Sigal et al. 2010; Travers, Hiriart et al. 2010; Trifonov 2010; Tsankov, Thompson et al. 2010; Weiner, Hughes et al. 2010; Xhemalce and Kouzarides 2010; Xu and Zhu 2010; Yi, Cai et al. 2010; Chen, Nott et al. 2011; Eustermann, Yang et al. 2011; Grey, Barthes et al. 2011; Jansen and Verstrepen 2011; John, Sabo et al. 2011; Muers 2011; Myers, Stamatoyannopoulos et al. 2011; Nady, Lemak et al. 2011; Oliver and Denu 2011; Rapoport and Trifonov 2011; Suganuma and Workman 2011; Tan, Luo et al. 2011; Trifonov 2011; Tsankov, Yanagisawa et al. 2011; Verrier, Vandromme et al. 2011; Wang, Bryant et al. 2011; Wang and Patel 2011; Yun, Wu et al. 2011; Zhang and Pugh 2011)

Organization of chromatin in the genome: Insulators, repeats, mobile elements, heterochromatic regions, position effects and chromatin domains

(Passarge 1979; Henikoff 1990; Kellum and Schedl 1991; Henikoff 1992; Zacharias 1995; Gdula, Gerasimova et al. 1996; Cai and Levine 1997; Sigrist and Pirrotta 1997; Gerasimova and Corces 1998; Mihaly, Hogga et al. 1998; Buchner, Roth et al. 2000; Emery, Yannaki et al. 2000; Chen and Corces 2001; Carter, Chakalova et al. 2002; Byrd and Corces 2003; Ogata, Kozuka et al. 2003; Perrod and Gasser 2003; Capelson and Corces 2004; Brasset and Vaury 2005; Dehghani, Dellaire et al. 2005; Muegge 2005; Wei, Liu et al. 2005; Yasuhara, DeCrease et al. 2005; Youngson, Kocialkowski et al. 2005; Zhao and Dean 2005; Capelson and Corces 2006; Schulze, McAllister et al. 2006; Scott, Merrett et al. 2006; Talbert and Henikoff 2006; Carchilan, Delgado et al. 2007; Dorman, Bushey et al. 2007; Lunyak, Prefontaine et al. 2007; Sexton, Umlauf et al. 2007; Suzuki, Ono et al. 2007; Bushey, Dorman et al. 2008; Filippova 2008; Fu, Sinha et al. 2008; Girton and Johansen 2008; Kumaran, Thakar et al. 2008; Simms, Dugas et al. 2008; Williams, Harker et al. 2008; Bushey, Ramos et al. 2009; Cuddapah, Jothi et al. 2009; de Wit and van Steensel 2009; Gurudatta and Corces 2009; Hon, Hawkins et al. 2009; Kadauke and Blobel 2009; Kotnova, Salenko et al. 2009; Las Penas, Urdampilleta et al. 2009; Miele, Bystricky et al. 2009; Molto, Fernandez et al. 2009; Ong and Corces 2009; Redrup, Branco et al. 2009; Rouquette, Genoud et al. 2009; Torok, Ching et al. 2009; Chang, Hsu et al. 2010; Deng and Blobel 2010; Dickson, Gowher et al. 2010; Guetg, Lienemann et al. 2010; Larson and Yuan 2010; MacPherson and Sadowski 2010; Ohlsson, Bartkuhn et al. 2010; Raab and Kamakaka 2010; Rebollo, Horard et al. 2010; Stein, van Wijnen et al. 2010; Tamaru 2010; van Koningsbruggen, Gierlinski et al. 2010; Wallace, Plata et al. 2010; Espinoza and Ren 2011; Li, Muller et al. 2011; Lienert, Wirbelauer et al. 2011; Mirny 2011; Noordermeer, de Wit et al. 2011; Olszak, van Essen et al. 2011; Ram, Goren et al. 2011; Ramos, Torre et al. 2011; Roudier, Ahmed et al. 2011; Stein, Stein et al. 2011)

Chromatin reformatting (remodeling) and developmental reprogramming