[ James A. Shapiro ] James A. Shapiro


Exon Shuffling

(Hall, Liu et al. 1989; Doolittle and Bork 1993; Doolittle 1995; Moran, DeBerardinis et al. 1999; Hiller, Hetzer et al. 2000; Kolkman and Stemmer 2001; Lander, Linton et al. 2001; Kaessmann, Zollner et al. 2002; Moran and Gilbert 2002; Deininger, Moran et al. 2003; Ejima and Yang 2003; van Rijk and Bloemendal 2003; Jiang, Bao et al. 2004; Liu and Grigoriev 2004; Morgante, Brunner et al. 2005; Babushok, Ohshima et al. 2007; Damert, Raiz et al. 2009; Hancks, Ewing et al. 2009; Kawashima, Kawashima et al. 2009; Cancherini, Franca et al. 2010; Doolittle 2010; Elrouby and Bureau 2010; Taniguchi-Ikeda, Kobayashi et al. 2011)

 

REFERENCES

 

Babushok, D. V., K. Ohshima, et al. (2007). "A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids." Genome Res 17(8): 1129-1138. http://www.ncbi.nlm.nih.gov/pubmed/17623810.

Cancherini, D. V., G. S. Franca, et al. (2010). "The role of exon shuffling in shaping protein-protein interaction networks." BMC Genomics 11 Suppl 5: S11. http://www.ncbi.nlm.nih.gov/pubmed/21210967.

Damert, A., J. Raiz, et al. (2009). "5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome." Genome Res 19(11): 1992-2008. http://www.ncbi.nlm.nih.gov/pubmed/19652014.

Deininger, P. L., J. V. Moran, et al. (2003). "Mobile elements and mammalian genome evolution." Curr Opin Genet Dev 13(6): 651-658. http://www.ncbi.nlm.nih.gov/pubmed/14638329.

Doolittle, R. F. (1995). "The multiplicity of domains in proteins." Annu Rev Biochem 64: 287-314. http://www.ncbi.nlm.nih.gov/pubmed/7574483.

Doolittle, R. F. (2010). "The Roots of Bioinformatics in Protein Evolution." PLoS Comput Biol 6(7): e1000875. http://www.ncbi.nlm.nih.gov/pubmed/20686682.

Doolittle, R. F. and P. Bork (1993). "Evolutionarily mobile modules in proteins." Sci Am 269(4): 50-56. http://www.ncbi.nlm.nih.gov/pubmed/8235550.

Ejima, Y. and L. Yang (2003). "Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling." Hum Mol Genet 12(11): 1321-1328. http://www.ncbi.nlm.nih.gov/pubmed/12761047.

Elrouby, N. and T. E. Bureau (2010). "Bs1, a new chimeric gene formed by retrotransposon-mediated exon shuffling in maize." Plant Physiol 153(3): 1413-1424. http://www.ncbi.nlm.nih.gov/pubmed/20488894.

Hall, D. H., Y. Liu, et al. (1989). "Exon shuffling by recombination between self-splicing introns of bacteriophage T4." Nature 340(6234): 575-576. http://www.ncbi.nlm.nih.gov/pubmed/2770862.

Hancks, D. C., A. D. Ewing, et al. (2009). "Exon-trapping mediated by the human retrotransposon SVA." Genome Res 19(11): 1983-1991. http://www.ncbi.nlm.nih.gov/pubmed/19635844.

Hiller, R., M. Hetzer, et al. (2000). "Transposition and exon shuffling by group II intron RNA molecules in pieces." J Mol Biol 297(2): 301-308. http://www.ncbi.nlm.nih.gov/pubmed/10715202.

Jiang, N., Z. Bao, et al. (2004). "Pack-MULE transposable elements mediate gene evolution in plants." Nature 431(7008): 569-573. http://www.ncbi.nlm.nih.gov/pubmed/15457261.

Kaessmann, H., S. Zollner, et al. (2002). "Signatures of domain shuffling in the human genome." Genome Res 12(11): 1642-1650. http://www.ncbi.nlm.nih.gov/pubmed/12421750.

Kawashima, T., S. Kawashima, et al. (2009). "Domain shuffling and the evolution of vertebrates." Genome Res 19(8): 1393-1403. http://www.ncbi.nlm.nih.gov/pubmed/19443856.

Kolkman, J. A. and W. P. Stemmer (2001). "Directed evolution of proteins by exon shuffling." Nat Biotechnol 19(5): 423-428. http://www.ncbi.nlm.nih.gov/pubmed/11329010.

Lander, E. S., L. M. Linton, et al. (2001). "Initial sequencing and analysis of the human genome." Nature 409(6822): 860-921. http://www.ncbi.nlm.nih.gov/pubmed/11237011.

Liu, M. and A. Grigoriev (2004). "Protein domains correlate strongly with exons in multiple eukaryotic genomes--evidence of exon shuffling?" Trends Genet 20(9): 399-403. http://www.ncbi.nlm.nih.gov/pubmed/15313546.

Moran, J. and N. Gilbert (2002). Mammalian LINE-1 Retrotransposons and Related Elements, Macmillan Publishers Limited. All rights reserved. .

Moran, J. V., R. J. DeBerardinis, et al. (1999). "Exon shuffling by L1 retrotransposition." Science 283(5407): 1530-1534. http://www.ncbi.nlm.nih.gov/pubmed/10066175.

Morgante, M., S. Brunner, et al. (2005). "Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize." Nat Genet 37(9): 997-1002. http://www.ncbi.nlm.nih.gov/pubmed/16056225.

Taniguchi-Ikeda, M., K. Kobayashi, et al. (2011). "Pathogenic exon-trapping by SVA retrotransposon and rescue in Fukuyama muscular dystrophy." Nature 478(7367): 127-131. http://www.ncbi.nlm.nih.gov/pubmed/21979053.

van Rijk, A. and H. Bloemendal (2003). "Molecular mechanisms of exon shuffling: illegitimate recombination." Genetica 118(2-3): 245-249. http://www.ncbi.nlm.nih.gov/pubmed/12868613.