BioSci 277 "Molecular Genetic Dissection of the Gene and the Genome"

                   James A. Shapiro 2-1625, jsha@midway, CLSC969.

                   Spring Quarter: Tu, Thurs 1:30 - 3:50 PM  - BSLC 202


                   The course deals with the impact of molecular genetics on basic concepts of heredity
                   and evolution. The class will meet twice weekly to discuss the underlying science and
                   theoretical significance of discoveries presented in Scientific American articles
                   dealing with the classical view of the gene, genetic structure in the molecular era,
                   transcriptional regulation in prokaryotes and eukaryotes, genetic engineering, mobile
                   genetic elements, bacterial antibiotic resistance as an evolutionary case study, DNA
                   repair systems and mutagenesis, and the action of the genome in development. In
                   addition to participating actively in class discussions, students will be expected to
                   write a ten-page paper utilizing additional source material on the following question:

                   o What is an example of how the draft sequence of the human genome illustrates a
                   fundamental change in our basic genetic and evolutionary concepts?
                   (The students will have to have their paper topic approved by the instructor.)

                   PAPERS FOR DISCUSSION (*) AND BACKGROUND

                   3/29/01 The classical view of the gene
                   *Beadle, G.W. 1948. The genes of men and molds. Sci. Amer. 179(3),  30.
                   *Benzer, S. 1962. The fine structure of the gene. Sci. Amer. 206(1), 70.
                   * Yanofsky, C. 1967. Gene structure and protein structure. Sci. Amer. 216(5), 80.

                   4/3 - 4/5/01 Genetic structure in the molecular era.
                   *Fiddes, J.C. 1977 The nucleotide sequence of a viral DNA. Sci. Amer. 237(6), 55.
                   *Chambon, P. 1981. Split genes.  Sci. Amer. 244(5), 60.
                   Scheller, R.H. and R. Axel. 1984. How genes control an innate behavior. Sci. Amer.
                   250(3), 54
                   Moyzis, R.K. 1991. The human telomere. Sci. Amer. 265(2), 48.
                   *Britten, R.J. and D.E. Kohne. 1970. Repeated segments of DNA. Sci. Amer. 222(4),
                   24.
                   *Doolittle RF.  Bork P.  Evolutionarily mobile modules in proteins. Scientific
                   American.  269(4):50-6, 1993 Oct.

                   4/10 - 4/12/01 Transcriptional regulation
                   *Jacob, F. and E. Wollman. 1961. Viruses and genes. Sci. Amer. 204(6), 93.
                   Ptashne, M. and W. Gilbert. 1970. Genetic repressors. Sci. Amer. 222(6), 36.
                   Maniatis, T. and M. Ptashne. 1976. A  DNA operator-repressor system. Sci. Amer.
                   234(1), 64.
                   *Ptashne, M., A.D. Johnson and C.O. Pabo. 1982. A genetic switch in a bacterial
                   virus.  Sci. Amer.  247(5), 128.
                   O'Malley, B.W. and W.T. Schrader. 1976. The receptors of steroid hormones. Sci.
                   Amer. 234(2), 32.
                   Moses, P.B. and N.-H. Chua. 1988. Light switches for plant genes. Sci. Amer. 258(4),
                   88.
                   Ptashne, M. 1989. How gene activators work. Sci. Amer.  260(1), 41.
                   *McKnight, S.L. 1991. Molecular zippers in gene regulation. Sci. Amer.  (4), 54.
                   *Tjian R. Molecular machines that control genes. Scientific American.  272(2):54-61,
                   1995 Feb.

                   4/17 - 4/19/01 Splicing and RNA processing
                   *Chambon, P. 1981. Split genes.  Sci. Amer. 244(5), 60.
                   Darnell, J.E. 1983. The processing of RNA.  Sci. Amer. 249(4), 90.
                   *Cech, T.R. 1986. RNA as an enzyme. Sci. Amer. 255(5), 64.
                   *Steitz, J.A. 1988. "Snurps."  Sci. Amer. 258(6), 56.
                   Ross, J. 1989. The turnover of messenger RNA. Sci. Amer. 260(4), 48.

                   4/24 - 4/26/01 Genetic engineering
                   *Cohen, S.N. 1975. The manipulation of genes. Sci. Amer. 233(1), 25.
                   Gilbert, W. and L. Villa-Komaroff. 1980. Useful proteins from recombinant bacteria.
                   Sci. Amer. 242(4),  74.
                   *Chilton, M.-D. 1983. A vector for introducing new genes into plants.  Sci. Amer.
                   248(6), 51.
                   Pestka, S. 1983. The purification and manufacture of human interferons.  Sci. Amer.
                   249(2), 36.
                   *Murray, A.W. and J.W. Szostak. 1987. Artificial chromosomes. Sci. Amer. 257(5), 62.

                   *Capecchi MR. Targeted gene replacement. Scientific American.  270(3):52-9, 1994
                   Mar.

                   5/1-5/3/01 Transposable elements
                   *Cohen, S.N. and J.A. Shapiro. 1980. Transposable genetic elements. Sci. Amer. 242
                   (2), 40-49.
                   *Federoff, N.V. 1984. Transposable genetic elements in maize. Sci. Amer. 250(6),
                   85.
                   *Varmus, H. 1987. Reverse transcription. Sci. Amer. 257(3), 56.
                   Verma, I. 1990. Gene therapy. Sci. Amer. 263(5), 68.
                   J. Brosius. 1991. Retroposons--Seeds of evolution. Science 251, 753.

                   5/8/01 An evolutionary case study
                   *Watanabe, T. 1967. Infectious drug resistance. Sci. Amer. 217(6), 19.
                   *Novick, R.P. 1980. Plasmids.  Sci. Amer. 243(6), 103.

                   5/15 - 5/17/01 Repair systems and mutagenesis
                   Devoret, R. 1979. Bacterial tests for potential carcinogens. Sci. Amer. 241(2),  40.
                   *Howard-Flanders, P. 1981. Inducible repair of DNA. Sci. Amer. 245(5), 72.
                   *Radman, M. and R. Wagner. 1988. The high fidelity of DNA duplication. Sci. Amer.
                   259(2), 40.

                   5/22 - 5/24/01 The genome in development and cell biology
                   De Robertis, E.M. and J.B. Gurdon. 1979. Gene transplantation and the analysis of
                   development.Sci. Amer.   241(6), 60.
                   *Gehring, W.J. 1985. The molecular basis of development.Sci. Amer. 253(4), 152B.
                   *De Robertis, E.M., G. Oliver and C.V.E. Wright. 1990. Homeobox genes and the
                   vertebrate body plan.  Sci. Amer. 263(1), 46.
                   Tonegawa, S. 1985. The molecules of the immune system.Sci. Amer. 253(4), 122.
                   Holliday, R. 1989. A different kind of inheritance. Sci. Amer. 260(6), 60.
                   McGinnis W.  Kuziora M. The molecular architects of body design. Scientific
                   American.  270(2):58-61, 64-6, 1994 Feb.
                   W. K. Cavenee & R. L. White. 1995.The genetic basis of cancer. Sci Am 272: 72-79
                   *Robert Weinberg, "How Cancer Arises," Scientific American 275, no. 3 (September
                   1996), pp. 62-70.