Table II.1 DNA content in higher eukaryotes (Shapiro and Sternberg 2005) |
||||
Species |
Genome size1 |
% repetitive DNA |
% coding sequences |
Reference |
Animals |
|
|
|
|
Caenorhabditis elegans |
100 MB |
16.5 |
14 |
(Stein, Bao et al. 2003) |
Caenorhabditis briggsae |
104 MB |
22.4 |
13 |
(Stein, Bao et al. 2003) |
Drosophila melanogaster |
175 MB |
33.7 (female) ~57 (male)2 |
<10 |
(Celniker, Wheeler et al. 2002; Bennett, Leitch et al. 2003) |
Ciona intestinalis |
157MB |
35 |
9.5 |
(Dehal, Satou et al. 2002) |
Fugu rubripes |
365MB |
15 |
9.5 |
(Aparicio, Chapman et al. 2002) |
Canis domesticus |
2.4GB |
31 |
1.45 |
(Kirkness, Bafna et al. 2003) |
Mus musculus |
2.5GB |
40 |
1.4 |
(Waterston, Lindblad-Toh et al. 2002) |
Homo sapiens |
2.9 GB |
>50 |
1.2 |
(Lander, Linton et al. 2001) |
Plants |
|
|
|
|
Arabidopsis thaliana |
125-157 MB |
13-14 |
21 |
(Initiative 2000; Bennett, Leitch et al. 2003) |
Oryza sativa (indica) |
466 MB |
42 |
11.8 |
(Yu, Hu et al. 2002) |
Oryza sativa (Japonica) |
420 MB |
45 |
11.9 |
(Goff, Ricke et al. 2002) |
Zea mays |
2.5 GB |
77 |
1 |
(Meyers, Tingey et al. 2001) |
REFERENCES
Aparicio, S., J. Chapman, et al. (2002). "Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes." Science 297(5585): 1301-1310. http://www.ncbi.nlm.nih.gov/pubmed/12142439.
Bennett, M. D., I. J. Leitch, et al. (2003). "Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb." Ann Bot (Lond) 91(5): 547-557. http://www.ncbi.nlm.nih.gov/pubmed/12646499.
Celniker, S. E., D. A. Wheeler, et al. (2002). "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence." Genome Biol 3(12): RESEARCH0079. http://www.ncbi.nlm.nih.gov/pubmed/12537568.
Dehal, P., Y. Satou, et al. (2002). "The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins." Science 298(5601): 2157-2167. http://www.ncbi.nlm.nih.gov/pubmed/12481130.
Initiative, A. G. (2000). "Analysis of the genome sequence of the flowering plant Arabidopsis thaliana." Nature 408(6814): 796-815. http://www.ncbi.nlm.nih.gov/pubmed/11130711.
Kirkness, E. F., V. Bafna, et al. (2003). "The dog genome: survey sequencing and comparative analysis." Science 301(5641): 1898-1903. http://www.ncbi.nlm.nih.gov/pubmed/14512627.
Lander, E. S., L. M. Linton, et al. (2001). "Initial sequencing and analysis of the human genome." Nature 409(6822): 860-921. http://www.ncbi.nlm.nih.gov/pubmed/11237011.
Meyers, B. C., S. V. Tingey, et al. (2001). "Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome." Genome Res 11(10): 1660-1676. http://www.ncbi.nlm.nih.gov/pubmed/11591643.
Stein, L. D., Z. Bao, et al. (2003). "The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics." PLoS Biol 1(2): E45. http://www.ncbi.nlm.nih.gov/pubmed/14624247.
Waterston, R. H., K. Lindblad-Toh, et al. (2002). "Initial sequencing and comparative analysis of the mouse genome." Nature 420(6915): 520-562. http://www.ncbi.nlm.nih.gov/pubmed/12466850.
Yu, J., S. Hu, et al. (2002). "A draft sequence of the rice genome (Oryza sativa L. ssp. indica)." Science 296(5565): 79-92. http://www.ncbi.nlm.nih.gov/pubmed/11935017.