Pervasive Genome Transcription

(Birney, Stamatoyannopoulos et al. 2007; Kapranov, Willingham et al. 2007; Belostotsky 2009; Berretta and Morillon 2009; Dinger, Amaral et al. 2009; Jacquier 2009; Lunzer, Golding et al. 2010; Derrien, Johnson et al. 2012; Djebali, Davis et al. 2012; Hangauer, Vaughn et al. 2013)

 

REFERENCES

 

Belostotsky, D. (2009). "Exosome complex and pervasive transcription in eukaryotic genomes." Curr Opin Cell Biol 21(3): 352-358. http://www.ncbi.nlm.nih.gov/pubmed/19467852.

Berretta, J. and A. Morillon (2009). "Pervasive transcription constitutes a new level of eukaryotic genome regulation." EMBO Rep 10(9): 973-982. http://www.ncbi.nlm.nih.gov/pubmed/19680288.

Birney, E., J. A. Stamatoyannopoulos, et al. (2007). "Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project." Nature 447(7146): 799-816. http://www.ncbi.nlm.nih.gov/pubmed/17571346.

Derrien, T., R. Johnson, et al. (2012). "The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression." Genome Res 22(9): 1775-1789. http://www.ncbi.nlm.nih.gov/pubmed/22955988.

Dinger, M. E., P. P. Amaral, et al. (2009). "Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications." Brief Funct Genomic Proteomic 8(6): 407-423. http://www.ncbi.nlm.nih.gov/pubmed/19770204.

Djebali, S., C. A. Davis, et al. (2012). "Landscape of transcription in human cells." Nature 489(7414): 101-108. http://www.ncbi.nlm.nih.gov/pubmed/22955620.

Hangauer, M. J., I. W. Vaughn, et al. (2013). "Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs." PLoS Genet 9(6): e1003569. http://www.ncbi.nlm.nih.gov/pubmed/23818866.

Jacquier, A. (2009). "The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs." Nat Rev Genet 10(12): 833-844. http://www.ncbi.nlm.nih.gov/pubmed/19920851.

Kapranov, P., A. T. Willingham, et al. (2007). "Genome-wide transcription and the implications for genomic organization." Nat Rev Genet 8(6): 413-423. http://www.ncbi.nlm.nih.gov/pubmed/17486121.

Lunzer, M., G. B. Golding, et al. (2010). "Pervasive cryptic epistasis in molecular evolution." PLoS Genet 6(10): e1001162. http://www.ncbi.nlm.nih.gov/pubmed/20975933.