Intercellular Signals In The Cell Death Decision

(Jarpe, Widmann et al. 1998; Koonin and Aravind 2002; Segovia, Haramaty et al. 2003; Bidle and Falkowski 2004; Ameisen 2005; Janes, Albeck et al. 2005; Miller-Jensen, Janes et al. 2007; Song 2007; Krieghoff-Henning and Hofmann 2008; Lane 2008; Liang, Li et al. 2008; Schutze and Schneider-Brachert 2009; Christofferson and Yuan 2010; Han, Zhong et al. 2011; Yi, Pan et al. 2011; Yi, Vakifahmetoglu-Norberg et al. 2011)

 

Pro-death signals

(Bradley and Pober 2001; Chung, Park et al. 2002; Lee and Lee 2002; Lin, Smith et al. 2003; Marini and Belka 2003; Janes, Albeck et al. 2005; Docherty, O'Sullivan et al. 2006; Du, Su et al. 2008; Garcia-Contreras, Zhang et al. 2008; Mur, Kenton et al. 2008; Engelberg-Kulka, Yelin et al. 2009; Holoch and Griffith 2009; Loriaux and Hoffmann 2009; Sollner, Durchschlag et al. 2009; Van Herreweghe, Festjens et al. 2010; Vandenabeele, Declercq et al. 2010; Xu, Wang et al. 2010)

Pro-life signals, including extracellular matrix

(Meredith, Fazeli et al. 1993; Danielsen and Maihle 2002; Moustakas, Pardali et al. 2002; Pozzi and Zent 2003; Gomez-Vicente, Doonan et al. 2006; Pardali and Moustakas 2007; Khoury, Yang et al. 2008; Heino and Kapyla 2009; Tsang, Cheung et al. 2009; Ozbek, Balasubramanian et al. 2010; Santibanez, Quintanilla et al. 2011; Segatto, Anastasi et al. 2011; Winn, Carter et al. 2011)

Apoptosis decision networks

(Jarpe, Widmann et al. 1998; Tsujimoto and Shimizu 2000; Hayes 2003; Gerdes, Christensen et al. 2005; Braithwaite, Del Sal et al. 2006; Cheng, Berman et al. 2006; Festjens, Vanden Berghe et al. 2007; Miller-Jensen, Janes et al. 2007; Vachova and Palkova 2007; Zmasek, Zhang et al. 2007; Abe, Ishiai et al. 2008; Castro, Dalmolin et al. 2008; Krieghoff-Henning and Hofmann 2008; Mazzoni and Falcone 2008; Pereira, Silva et al. 2008; Loriaux and Hoffmann 2009; Lynam-Lennon, Maher et al. 2009; Schutze and Schneider-Brachert 2009; Skaug, Jiang et al. 2009; Li, Ni et al. 2010; Schlereth, Beinoraviciute-Kellner et al. 2010; Schlereth, Charles et al. 2010; Shemarova 2010; Vandenabeele, Galluzzi et al. 2010; Feoktistova, Geserick et al. 2011; Grabbe, Husnjak et al. 2011; Harhaj and Dixit 2011; Ikeda, Deribe et al. 2011; Liu and Chen 2011; Tenev, Bianchi et al. 2011; Winn, Carter et al. 2011)

Apoptosis in development, morphogenesis and regeneration

(Wride 2000; Baehrecke 2002; McCarthy 2003; Bassnett 2009; Kim, Wang et al. 2009; Kolodkin-Gal, Verdiger et al. 2009; Bergmann and Steller 2010; Bassnett, Shi et al. 2011; Lo, Woo et al. 2011; Wride 2011)

Plant hypersensitive and immune responses

(Pontier, Balague et al. 1998; Heath 2000; Hofius, Tsitsigiannis et al. 2007; Mur, Kenton et al. 2008; Hayward, Tsao et al. 2009; McLellan, Gilroy et al. 2009)

REFERENCES

 

Abe, T., M. Ishiai, et al. (2008). "KU70/80, DNA-PKcs, and Artemis are essential for the rapid induction of apoptosis after massive DSB formation." Cell Signal 20(11): 1978-1985. http://www.ncbi.nlm.nih.gov/pubmed/18674614.

Ameisen, J. C. (2005). "[Selective "death programs" or pleiotropic"life programs"? Looking for programmed cell death in the light of evolution]." J Soc Biol 199(3): 175-189. http://www.ncbi.nlm.nih.gov/pubmed/16471257.

Baehrecke, E. H. (2002). "How death shapes life during development." Nat Rev Mol Cell Biol 3(10): 779-787. http://www.ncbi.nlm.nih.gov/pubmed/12360194.

Bassnett, S. (2009). "On the mechanism of organelle degradation in the vertebrate lens." Exp Eye Res 88(2): 133-139. http://www.ncbi.nlm.nih.gov/pubmed/18840431.

Bassnett, S., Y. Shi, et al. (2011). "Biological glass: structural determinants of eye lens transparency." Philos Trans R Soc Lond B Biol Sci 366(1568): 1250-1264. http://www.ncbi.nlm.nih.gov/pubmed/21402584.

Bergmann, A. and H. Steller (2010). "Apoptosis, stem cells, and tissue regeneration." Sci Signal 3(145): re8. http://www.ncbi.nlm.nih.gov/pubmed/20978240.

Bidle, K. D. and P. G. Falkowski (2004). "Cell death in planktonic, photosynthetic microorganisms." Nat Rev Microbiol 2(8): 643-655. http://www.ncbi.nlm.nih.gov/pubmed/15263899.

Bradley, J. R. and J. S. Pober (2001). "Tumor necrosis factor receptor-associated factors (TRAFs)." Oncogene 20(44): 6482-6491. http://www.ncbi.nlm.nih.gov/pubmed/11607847.

Braithwaite, A. W., G. Del Sal, et al. (2006). "Some p53-binding proteins that can function as arbiters of life and death." Cell Death Differ 13(6): 984-993. http://www.ncbi.nlm.nih.gov/pubmed/16575404.

Castro, M. A., R. J. Dalmolin, et al. (2008). "Evolutionary origins of human apoptosis and genome-stability gene networks." Nucleic Acids Res 36(19): 6269-6283. http://www.ncbi.nlm.nih.gov/pubmed/18832373.

Cheng, W. C., S. B. Berman, et al. (2006). "Mitochondrial factors with dual roles in death and survival." Oncogene 25(34): 4697-4705. http://www.ncbi.nlm.nih.gov/pubmed/16892083.

Christofferson, D. E. and J. Yuan (2010). "Necroptosis as an alternative form of programmed cell death." Curr Opin Cell Biol 22(2): 263-268. http://www.ncbi.nlm.nih.gov/pubmed/20045303.

Chung, J. Y., Y. C. Park, et al. (2002). "All TRAFs are not created equal: common and distinct molecular mechanisms of TRAF-mediated signal transduction." J Cell Sci 115(Pt 4): 679-688. http://www.ncbi.nlm.nih.gov/pubmed/11865024.

Danielsen, A. J. and N. J. Maihle (2002). "The EGF/ErbB receptor family and apoptosis." Growth Factors 20(1): 1-15. http://www.ncbi.nlm.nih.gov/pubmed/11999214.

Docherty, N. G., O. E. O'Sullivan, et al. (2006). "TGF-beta1-induced EMT can occur independently of its proapoptotic effects and is aided by EGF receptor activation." Am J Physiol Renal Physiol 290(5): F1202-1212. http://www.ncbi.nlm.nih.gov/pubmed/16368739.

Du, L., Y. Su, et al. (2008). "Formic acid induces Yca1p-independent apoptosis-like cell death in the yeast Saccharomyces cerevisiae." FEMS Yeast Res 8(4): 531-539. http://www.ncbi.nlm.nih.gov/pubmed/18452540.

Engelberg-Kulka, H., I. Yelin, et al. (2009). "Activation of a built-in bacterial programmed cell death system as a novel mechanism of action of some antibiotics." Commun Integr Biol 2(3): 211-212. http://www.ncbi.nlm.nih.gov/pubmed/19641731.

Feoktistova, M., P. Geserick, et al. (2011). "cIAPs block Ripoptosome formation, a RIP1/caspase-8 containing intracellular cell death complex differentially regulated by cFLIP isoforms." Mol Cell 43(3): 449-463. http://www.ncbi.nlm.nih.gov/pubmed/21737330.

Festjens, N., T. Vanden Berghe, et al. (2007). "RIP1, a kinase on the crossroads of a cell's decision to live or die." Cell Death Differ 14(3): 400-410. http://www.ncbi.nlm.nih.gov/pubmed/17301840.

Garcia-Contreras, R., X. S. Zhang, et al. (2008). "Protein translation and cell death: the role of rare tRNAs in biofilm formation and in activating dormant phage killer genes." PLoS One 3(6): e2394. http://www.ncbi.nlm.nih.gov/pubmed/18545668.

Gerdes, K., S. K. Christensen, et al. (2005). "Prokaryotic toxin-antitoxin stress response loci." Nat Rev Microbiol 3(5): 371-382. http://www.ncbi.nlm.nih.gov/pubmed/15864262.

Gomez-Vicente, V., F. Doonan, et al. (2006). "Induction of BIM(EL) following growth factor withdrawal is a key event in caspase-dependent apoptosis of 661W photoreceptor cells." Eur J Neurosci 24(4): 981-990. http://www.ncbi.nlm.nih.gov/pubmed/16930425.

Grabbe, C., K. Husnjak, et al. (2011). "The spatial and temporal organization of ubiquitin networks." Nat Rev Mol Cell Biol. http://www.ncbi.nlm.nih.gov/pubmed/21448225.

Han, J., C. Q. Zhong, et al. (2011). "Programmed necrosis: backup to and competitor with apoptosis in the immune system." Nat Immunol 12(12): 1143-1149. http://www.ncbi.nlm.nih.gov/pubmed/22089220.

Harhaj, E. W. and V. M. Dixit (2011). "Deubiquitinases in the regulation of NF-kappaB signaling." Cell Res 21(1): 22-39. http://www.ncbi.nlm.nih.gov/pubmed/21119682.

Hayes, F. (2003). "Toxins-antitoxins: plasmid maintenance, programmed cell death, and cell cycle arrest." Science 301(5639): 1496-1499. http://www.ncbi.nlm.nih.gov/pubmed/12970556.

Hayward, A. P., J. Tsao, et al. (2009). "Autophagy and plant innate immunity: Defense through degradation." Semin Cell Dev Biol 20(9): 1041-1047. http://www.ncbi.nlm.nih.gov/pubmed/19406248.

Heath, M. C. (2000). "Hypersensitive response-related death." Plant Mol Biol 44(3): 321-334. http://www.ncbi.nlm.nih.gov/pubmed/11199391.

Heino, J. and J. Kapyla (2009). "Cellular receptors of extracellular matrix molecules." Curr Pharm Des\ 15\(12\): 1309-1317\. http://www.ncbi.nlm.nih.gov/pubmed/19355970\.

Hofius, D., D. I. Tsitsigiannis, et al. (2007). "Inducible cell death in plant immunity." Semin Cancer Biol 17(2): 166-187. http://www.ncbi.nlm.nih.gov/pubmed/17218111.

Holoch, P. A. and T. S. Griffith (2009). "TNF-related apoptosis-inducing ligand (TRAIL): a new path to anti-cancer therapies." Eur J Pharmacol 625(1-3): 63-72. http://www.ncbi.nlm.nih.gov/pubmed/19836385\.

Ikeda, F., Y. L. Deribe, et al. (2011). "SHARPIN forms a linear ubiquitin ligase complex regulating NF-kappaB activity and apoptosis." Nature 471(7340): 637-641. http://www.ncbi.nlm.nih.gov/pubmed/21455181.

Janes, K. A., J. G. Albeck, et al. (2005). "A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis." Science 310(5754): 1646-1653. http://www.ncbi.nlm.nih.gov/pubmed/16339439.

Jarpe, M. B., C. Widmann, et al. (1998). "Anti-apoptotic versus pro-apoptotic signal transduction: checkpoints and stop signs along the road to death." Oncogene 17(11 Reviews): 1475-1482. http://www.ncbi.nlm.nih.gov/pubmed/9779994.

Khoury, C. M., Z. Yang, et al. (2008). "A TSC22-like motif defines a novel antiapoptotic protein family." FEMS Yeast Res 8(4): 540-563. http://www.ncbi.nlm.nih.gov/pubmed/18355271.

Kim, Y., X. Wang, et al. (2009). "Toxin-antitoxin systems in Escherichia coli influence biofilm formation through YjgK (TabA) and fimbriae." J Bacteriol 191(4): 1258-1267. http://www.ncbi.nlm.nih.gov/pubmed/19060153.

Kolodkin-Gal, I., R. Verdiger, et al. (2009). "A differential effect of E. coli toxin-antitoxin systems on cell death in liquid media and biofilm formation." PLoS One 4(8): e6785. http://www.ncbi.nlm.nih.gov/pubmed/19707553.

Koonin, E. V. and L. Aravind (2002). "Origin and evolution of eukaryotic apoptosis: the bacterial connection." Cell Death Differ 9(4): 394-404. http://www.ncbi.nlm.nih.gov/pubmed/11965492.

Krieghoff-Henning, E. and T. G. Hofmann (2008). "Role of nuclear bodies in apoptosis signalling." Biochim Biophys Acta 1783(11): 2185-2194. http://www.ncbi.nlm.nih.gov/pubmed/18680765.

Lane, N. (2008). "Marine microbiology: origins of death." Nature 453(7195): 583-585. http://www.ncbi.nlm.nih.gov/pubmed/18509414.

Lee, N. K. and S. Y. Lee (2002). "Modulation of life and death by the tumor necrosis factor receptor-associated factors (TRAFs)." J Biochem Mol Biol 35(1): 61-66. http://www.ncbi.nlm.nih.gov/pubmed/16248971.

Li, Z., M. Ni, et al. (2010). "Decision making of the p53 network: Death by integration." J Theor Biol. http://www.ncbi.nlm.nih.gov/pubmed/21130774.

Liang, Q., W. Li, et al. (2008). "Caspase-independent apoptosis in yeast." Biochim Biophys Acta 1783(7): 1311-1319. http://www.ncbi.nlm.nih.gov/pubmed/18358844.

Lin, D., M. A. Smith, et al. (2003). "Porphyromonas gingivalis infection during pregnancy increases maternal tumor necrosis factor alpha, suppresses maternal interleukin-10, and enhances fetal growth restriction and resorption in mice." Infect Immun 71(9): 5156-5162. http://www.ncbi.nlm.nih.gov/pubmed/12933859.

Liu, S. and Z. J. Chen (2011). "Expanding role of ubiquitination in NF-kappaB signaling." Cell Res 21(1): 6-21. http://www.ncbi.nlm.nih.gov/pubmed/21135871.

Lo, A. C., T. T. Woo, et al. (2011). "Apoptosis and other cell death mechanisms after retinal detachment: implications for photoreceptor rescue." Ophthalmologica 226 Suppl 1: 10-17. http://www.ncbi.nlm.nih.gov/pubmed/21778775.

Loriaux, P. and A. Hoffmann (2009). "Of elections and cell-death decisions." Mol Cell 34(3): 257-258. http://www.ncbi.nlm.nih.gov/pubmed/19450524.

Lynam-Lennon, N., S. G. Maher, et al. (2009). "The roles of microRNA in cancer and apoptosis." Biol Rev Camb Philos Soc 84(1): 55-71. http://www.ncbi.nlm.nih.gov/pubmed/19046400.

Marini, P. and C. Belka (2003). "Death receptor ligands: new strategies for combined treatment with ionizing radiation." Curr Med Chem Anticancer Agents 3(5): 334-342. http://www.ncbi.nlm.nih.gov/pubmed/12871079.

Mazzoni, C. and C. Falcone (2008). "Caspase-dependent apoptosis in yeast." Biochim Biophys Acta 1783(7): 1320-1327. http://www.ncbi.nlm.nih.gov/pubmed/18355456.

McCarthy, J. V. (2003). "Apoptosis and development." Essays Biochem 39: 11-24. http://www.ncbi.nlm.nih.gov/pubmed/14585071.

McLellan, H., E. M. Gilroy, et al. (2009). "Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence." New Phytol 183(2): 408-418. http://www.ncbi.nlm.nih.gov/pubmed/19453434.

Meredith, J. E., Jr., B. Fazeli, et al. (1993). "The extracellular matrix as a cell survival factor." Mol Biol Cell 4(9): 953-961. http://www.ncbi.nlm.nih.gov/pubmed/8257797.

Miller-Jensen, K., K. A. Janes, et al. (2007). "Common effector processing mediates cell-specific responses to stimuli." Nature 448(7153): 604-608. http://www.ncbi.nlm.nih.gov/pubmed/17637676.

Moustakas, A., K. Pardali, et al. (2002). "Mechanisms of TGF-beta signaling in regulation of cell growth and differentiation." Immunol Lett 82(1-2): 85-91. http://www.ncbi.nlm.nih.gov/pubmed/12008039.

Mur, L. A., P. Kenton, et al. (2008). "The hypersensitive response; the centenary is upon us but how much do we know?" J Exp Bot 59(3): 501-520. http://www.ncbi.nlm.nih.gov/pubmed/18079135.

Ozbek, S., P. G. Balasubramanian, et al. (2010). "The evolution of extracellular matrix." Mol Biol Cell 21(24): 4300-4305. http://www.ncbi.nlm.nih.gov/pubmed/21160071.

Pardali, K. and A. Moustakas (2007). "Actions of TGF-beta as tumor suppressor and pro-metastatic factor in human cancer." Biochim Biophys Acta 1775(1): 21-62. http://www.ncbi.nlm.nih.gov/pubmed/16904831.

Pereira, C., R. D. Silva, et al. (2008). "Mitochondria-dependent apoptosis in yeast." Biochim Biophys Acta 1783(7): 1286-1302. http://www.ncbi.nlm.nih.gov/pubmed/18406358.

Pontier, D., C. Balague, et al. (1998). "The hypersensitive response. A programmed cell death associated with plant resistance." C R Acad Sci III 321(9): 721-734. http://www.ncbi.nlm.nih.gov/pubmed/9809204\.

Pozzi, A. and R. Zent (2003). "Integrins: sensors of extracellular matrix and modulators of cell function." Nephron Exp Nephrol\ 94\(3\): e77-84\. http://www.ncbi.nlm.nih.gov/pubmed/12902617\.

Santibanez, J. F., M. Quintanilla, et al. (2011). "TGF-beta/TGF-beta receptor system and its role in physiological and pathological conditions." Clin Sci (Lond) 121(6): 233-251. http://www.ncbi.nlm.nih.gov/pubmed/21615335.

Schlereth, K., R. Beinoraviciute-Kellner, et al. (2010). "DNA binding cooperativity of p53 modulates the decision between cell-cycle arrest and apoptosis." Mol Cell 38(3): 356-368. http://www.ncbi.nlm.nih.gov/pubmed/20471942.

Schlereth, K., J. P. Charles, et al. (2010). "Life or death: p53-induced apoptosis requires DNA binding cooperativity." Cell Cycle 9(20): 4068-4076. http://www.ncbi.nlm.nih.gov/pubmed/20948308.

Schutze, S. and W. Schneider-Brachert (2009). "Impact of TNF-R1 and CD95 internalization on apoptotic and antiapoptotic signaling." Results Probl Cell Differ 49: 63-85. http://www.ncbi.nlm.nih.gov/pubmed/19132322.

Segatto, O., S. Anastasi, et al. (2011). "Regulation of epidermal growth factor receptor signalling by inducible feedback inhibitors." J Cell Sci 124(Pt 11): 1785-1793. http://www.ncbi.nlm.nih.gov/pubmed/21576352.

Segovia, M., L. Haramaty, et al. (2003). "Cell death in the unicellular chlorophyte Dunaliella tertiolecta. A hypothesis on the evolution of apoptosis in higher plants and metazoans." Plant Physiol 132(1): 99-105. http://www.ncbi.nlm.nih.gov/pubmed/12746516.

Shemarova, I. V. (2010). "Signaling mechanisms of apoptosis-like programmed cell death in unicellular eukaryotes." Comp Biochem Physiol B Biochem Mol Biol 155(4): 341-353. http://www.ncbi.nlm.nih.gov/pubmed/20117230.

Skaug, B., X. Jiang, et al. (2009). "The role of ubiquitin in NF-kappaB regulatory pathways." Annu Rev Biochem 78: 769-796. http://www.ncbi.nlm.nih.gov/pubmed/19489733.

Sollner, S., M. Durchschlag, et al. (2009). "The redox-sensing quinone reductase Lot6p acts as an inducer of yeast apoptosis." FEMS Yeast Res 9(6): 885-891. http://www.ncbi.nlm.nih.gov/pubmed/19709309.

Song, J. (2007). "EMT or apoptosis: a decision for TGF-beta." Cell Res 17(4): 289-290. http://www.ncbi.nlm.nih.gov/pubmed/17426696.

Tenev, T., K. Bianchi, et al. (2011). "The Ripoptosome, a signaling platform that assembles in response to genotoxic stress and loss of IAPs." Mol Cell 43(3): 432-448. http://www.ncbi.nlm.nih.gov/pubmed/21737329.

Tsang, K. Y., M. C. Cheung, et al. (2009). "The developmental roles of the extracellular matrix: beyond structure to regulation." Cell Tissue Res. http://www.ncbi.nlm.nih.gov/pubmed/19885678.

Tsujimoto, Y. and S. Shimizu (2000). "Bcl-2 family: life-or-death switch." FEBS Lett 466(1): 6-10. http://www.ncbi.nlm.nih.gov/pubmed/10648802.

Vachova, L. and Z. Palkova (2007). "Caspases in yeast apoptosis-like death: facts and artefacts." FEMS Yeast Res 7(1): 12-21. http://www.ncbi.nlm.nih.gov/pubmed/17311581.

Van Herreweghe, F., N. Festjens, et al. (2010). "Tumor necrosis factor-mediated cell death: to break or to burst, that's the question." Cell Mol Life Sci 67(10): 1567-1579. http://www.ncbi.nlm.nih.gov/pubmed/20198502.

Vandenabeele, P., W. Declercq, et al. (2010). "The role of the kinases RIP1 and RIP3 in TNF-induced necrosis." Sci Signal 3(115): re4. http://www.ncbi.nlm.nih.gov/pubmed/20354226.

Vandenabeele, P., L. Galluzzi, et al. (2010). "Molecular mechanisms of necroptosis: an ordered cellular explosion." Nat Rev Mol Cell Biol 11(10): 700-714. http://www.ncbi.nlm.nih.gov/pubmed/20823910.

Winn, J., M. Carter, et al. (2011). "Hox and a Newly Identified E2F Co-repress Cell Death in Caenorhabditis elegans." Genetics 188(4): 897-905. http://www.ncbi.nlm.nih.gov/pubmed/21596899.

Wride, M. A. (2000). "Minireview: apoptosis as seen through a lens." Apoptosis 5(3): 203-209. http://www.ncbi.nlm.nih.gov/pubmed/11225840.

Wride, M. A. (2011). "Lens fibre cell differentiation and organelle loss: many paths lead to clarity." Philos Trans R Soc Lond B Biol Sci 366(1568): 1219-1233. http://www.ncbi.nlm.nih.gov/pubmed/21402582.

Xu, C., J. Wang, et al. (2010). "The anthracenedione compound bostrycin induces mitochondria-mediated apoptosis in the yeast Saccharomyces cerevisiae." FEMS Yeast Res 10(3): 297-308. http://www.ncbi.nlm.nih.gov/pubmed/20345898.

Yi, C. H., H. Pan, et al. (2011). "Metabolic regulation of protein N-alpha-acetylation by Bcl-xL promotes cell survival." Cell 146(4): 607-620. http://www.ncbi.nlm.nih.gov/pubmed/21854985.

Yi, C. H., H. Vakifahmetoglu-Norberg, et al. (2011). "Integration of Apoptosis and Metabolism." Cold Spring Harb Symp Quant Biol. http://www.ncbi.nlm.nih.gov/pubmed/22089928.

Zmasek, C. M., Q. Zhang, et al. (2007). "Surprising complexity of the ancestral apoptosis network." Genome Biol 8(10): R226. http://www.ncbi.nlm.nih.gov/pubmed/17958905.