[ James A. Shapiro ] James A. Shapiro


DNA changes and cell differentiation

(Brusca, Hale et al. 1989; Stragier, Kunkel et al. 1989; Kunkel, Losick et al. 1990; Popham and Stragier 1992; Carrasco, Ramaswamy et al. 1994; Carrasco, Buettner et al. 1995; Carrasco and Golden 1995; Ramaswamy, Carrasco et al. 1997; Golden and Yoon 1998; Haber 1998; Klar, Ivanova et al. 1998; Dalgaard and Klar 1999; Carrasco, Holliday et al. 2005; Holmes, Kaykov et al. 2005; Coic, Richard et al. 2006; Coic, Sun et al. 2006; Kubo, Seleme et al. 2006; Klar 2007; van den Hurk, Meij et al. 2007; Yamada-Inagawa, Klar et al. 2007; Kano, Godoy et al. 2009; Astolfi, Salamini et al. 2010; Klar 2010; Rossetti, Schirrmeister et al. 2010; Singer, McConnell et al. 2010; Baillie, Barnett et al. 2011; Eickbush and Eickbush 2011; Kazazian 2011)

REFERENCES

 

Astolfi, P. A., F. Salamini, et al. (2010). "Are we Genomic Mosaics? Variations of the Genome of Somatic Cells can Contribute to Diversify our Phenotypes." Curr Genomics 11(6): 379-386. http://www.ncbi.nlm.nih.gov/pubmed/21358981.

Baillie, J. K., M. W. Barnett, et al. (2011). "Somatic retrotransposition alters the genetic landscape of the human brain." Nature. http://www.ncbi.nlm.nih.gov/pubmed/22037309.

Brusca, J. S., M. A. Hale, et al. (1989). "Excision of an 11-kilobase-pair DNA element from within the nifD gene in anabaena variabilis heterocysts." J Bacteriol 171(8): 4138-4145. http://www.ncbi.nlm.nih.gov/pubmed/2502534.

Carrasco, C. D., J. A. Buettner, et al. (1995). "Programmed DNA rearrangement of a cyanobacterial hupL gene in heterocysts." Proc Natl Acad Sci U S A 92(3): 791-795. http://www.ncbi.nlm.nih.gov/pubmed/7846053.

Carrasco, C. D. and J. W. Golden (1995). "Two heterocyst-specific DNA rearrangements of nif operons in Anabaena cylindrica and Nostoc sp. strain Mac." Microbiology 141 ( Pt 10): 2479-2487. http://www.ncbi.nlm.nih.gov/pubmed/7582007.

Carrasco, C. D., S. D. Holliday, et al. (2005). "Heterocyst-specific excision of the Anabaena sp. strain PCC 7120 hupL element requires xisC." J Bacteriol 187(17): 6031-6038. http://www.ncbi.nlm.nih.gov/pubmed/16109944.

Carrasco, C. D., K. S. Ramaswamy, et al. (1994). "Anabaena xisF gene encodes a developmentally regulated site-specific recombinase." Genes Dev 8(1): 74-83. http://www.ncbi.nlm.nih.gov/pubmed/8288129.

Coic, E., G. F. Richard, et al. (2006). "Saccharomyces cerevisiae donor preference during mating-type switching is\ dependent on chromosome architecture and organization." Genetics\ 173\(3\): 1197-1206\. http://www.ncbi.nlm.nih.gov/pubmed/16624909\.

Coic, E., K. Sun, et al. (2006). "Cell cycle-dependent regulation of Saccharomyces cerevisiae donor preference\ during mating-type switching by SBF (Swi4/Swi6) and Fkh1." Mol Cell Biol\ 26\(14\): 5470-5480\. http://www.ncbi.nlm.nih.gov/pubmed/16809780\.

Dalgaard, J. Z. and A. J. Klar (1999). "Orientation of DNA replication establishes mating-type switching pattern in S. pombe." Nature 400(6740): 181-184. http://www.ncbi.nlm.nih.gov/pubmed/10408447.

Eickbush, M. T. and T. H. Eickbush (2011). "Retrotransposition of R2 elements in somatic nuclei during the early development of Drosophila." Mob DNA 2(1): 11. http://www.ncbi.nlm.nih.gov/pubmed/21958913.

Golden, J. W. and H. S. Yoon (1998). "Heterocyst formation in Anabaena." Curr Opin Microbiol 1(6): 623-629. http://www.ncbi.nlm.nih.gov/pubmed/10066546.

Haber, J. E. (1998). "Mating-type gene switching in Saccharomyces cerevisiae." Annu Rev Genet 32: 561-599. http://www.ncbi.nlm.nih.gov/pubmed/9928492.

Holmes, A. M., A. Kaykov, et al. (2005). "Molecular and cellular dissection of mating-type switching steps in Schizosaccharomyces pombe." Mol Cell Biol 25(1): 303-311. http://www.ncbi.nlm.nih.gov/pubmed/15601851.

Kano, H., I. Godoy, et al. (2009). "L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism." Genes Dev 23(11): 1303-1312. http://www.ncbi.nlm.nih.gov/pubmed/19487571.

Kazazian, H. H., Jr. (2011). "Mobile DNA transposition in somatic cells." BMC Biol 9: 62. http://www.ncbi.nlm.nih.gov/pubmed/21958341.

Klar, A. J. (2007). "Lessons learned from studies of fission yeast mating-type switching and silencing." Annu Rev Genet 41: 213-236. http://www.ncbi.nlm.nih.gov/pubmed/17614787.

Klar, A. J. (2010). "The yeast mating-type switching mechanism: a memoir." Genetics 186(2): 443-449. http://www.ncbi.nlm.nih.gov/pubmed/20940334.

Klar, A. J., A. V. Ivanova, et al. (1998). "Multiple epigenetic events regulate mating-type switching of fission yeast." Novartis Found Symp 214: 87-99; discussion 99-103. http://www.ncbi.nlm.nih.gov/pubmed/9601013.

Kubo, S., M. C. Seleme, et al. (2006). "L1 retrotransposition in nondividing and primary human somatic cells." Proc Natl Acad Sci U S A\ 103\(21\): 8036-8041\. http://www.ncbi.nlm.nih.gov/pubmed/16698926\.

Kunkel, B., R. Losick, et al. (1990). "The Bacillus subtilis gene for the development transcription factor sigma K is generated by excision of a dispensable DNA element containing a sporulation recombinase gene." Genes Dev 4(4): 525-535. http://www.ncbi.nlm.nih.gov/pubmed/2163341.

Popham, D. L. and P. Stragier (1992). "Binding of the Bacillus subtilis spoIVCA product to the recombination sites of the element interrupting the sigma K-encoding gene." Proc Natl Acad Sci U S A 89(13): 5991-5995. http://www.ncbi.nlm.nih.gov/pubmed/1631085.

Ramaswamy, K. S., C. D. Carrasco, et al. (1997). "Cell-type specificity of the Anabaena fdxN-element rearrangement requires xisH and xisI." Mol Microbiol 23(6): 1241-1249. http://www.ncbi.nlm.nih.gov/pubmed/9106215.

Rossetti, V., B. E. Schirrmeister, et al. (2010). "The evolutionary path to terminal differentiation and division of labor in cyanobacteria." J Theor Biol 262(1): 23-34. http://www.ncbi.nlm.nih.gov/pubmed/19761779.

Singer, T., M. J. McConnell, et al. (2010). "LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes?" Trends Neurosci 33(8): 345-354. http://www.ncbi.nlm.nih.gov/pubmed/20471112.

Stragier, P., B. Kunkel, et al. (1989). "Chromosomal rearrangement generating a composite gene for a developmental transcription factor." Science 243(4890): 507-512. http://www.ncbi.nlm.nih.gov/pubmed/2536191.

van den Hurk, J. A., I. C. Meij, et al. (2007). "L1 retrotransposition can occur early in human embryonic development." Hum Mol Genet 16(13): 1587-1592. http://www.ncbi.nlm.nih.gov/pubmed/17483097.

Yamada-Inagawa, T., A. J. Klar, et al. (2007). "Schizosaccharomyces pombe switches mating type by the synthesis-dependent strand-annealing mechanism." Genetics 177(1): 255-265. http://www.ncbi.nlm.nih.gov/pubmed/17660548.